FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3962606
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC355080.8960769756064569No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC177980.44914886819431454No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC136170.34363749512315883No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG127250.3211270562856867No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT121560.30676781895550553No Hit
AGGCCCCAACGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTAT108620.27411254109038347No Hit
CGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTG92350.23305370253817814No Hit
AGGCTTTAGTGGCGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTACG74030.18682150080023097No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA62610.15800208246795164No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG60580.1528791911181682No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC42130.10631892244649102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)