FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3469254
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCCAACGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTAT88470.25501159615294816No Hit
CGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTG72590.209238066742879No Hit
AGGCTTTAGAGACACTGCAAAATAGCGAACCGTTTGCTGCCGCACTGGTG47470.1368305693385379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)