FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4517721
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG91840.20328833940829902No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAACACGGGAAACCTCACCCGGCC73000.16158589695999376No Hit
AGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTA70850.1568268602687063No Hit
TGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTC70410.1558529178760707No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC59180.13099525180948535No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTACCTGGTTGATCCTGCCAGTAG55690.12327011783153498No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG53720.11890951211905294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)