FastQCFastQC Report
Fri 10 May 2024
EGAF00007335318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4230461
Total Bases631.7 Mbp
Sequences flagged as poor quality0
Sequence length8-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTGGGTAACGACCACATCTACAACGTTATCGTCACAGCCC193040.45630960786543123No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC137850.325851012454671No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG93330.2206142545694193No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG72130.1705015127192994No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC59410.14043386760922746No Hit
TGGCGCACGGGTGCGTAACGCGTGGGAATCTGCCCTCAGGTTCGGAATAA56700.13402794636329232No Hit
CGGCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT55310.1307422524401005No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA50360.11904139997981307No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC44810.10592226237282415No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTCTCTCTCTCTCTCTCTCTCTCT44500.10518948171369503No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)