FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3529404
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACGAACGCTGGCGGCATGCCTAACACATGCAAGTCGAACGATGCTTT67690.1917887552685949No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC53750.15229200170907042No Hit
ATACCTCTCTCACACTCAAGACACCCAGTATCAAAGGCAGTTCCAGAGTT50430.14288531434769156No Hit
TTCAGGACACTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGT47950.13585863222232422No Hit
TCAGGACACTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTG42280.11979359687924647No Hit
AACTCGGCAAATTGCCTCCGTACCTTCGGAAGAAGGAGGCCCAGCATAAG42090.1192552623615772No Hit
GAACTCGGCAAATTGCCTCCGTACCTTCGGAAGAAGGAGGCCCAGCATAA38410.1088285727561934No Hit
TGGCCGGTCCGCCTCACCGCGAGTACTGGTCCGGCTGGGCCTTTCCTTCT37310.10571189923284498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)