FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3531777
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT488701.3837226982337787No Hit
GGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTAT386151.0933589521648734No Hit
CCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTG283590.8029668917375021No Hit
CGGCCCCCCTATACGGAGAGTTTGATTCTGGCTCAGAACGAACGCTGGCG95890.27150638333054433No Hit
CGGCCCCCCTGTGATCAAGCTACTAAGTGCAATACGGTGAATGCCTTGGT65590.18571387717854212No Hit
CGGCCCCCCTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGA65100.18432647361370777No Hit
CGGCCCCCCGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTC65040.18415658746291172No Hit
CGGCCCCCCGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATA59330.16798908877882154No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55570.15734288999560278No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC50650.14341222563032718No Hit
AGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACG50240.14225133693322087No Hit
CGGCCCCCCGGTCAAGCTACTAAGGGCAAGCGGTGGATGCCTTGGGACTT43050.12189331319616159No Hit
CGGCCCCCCAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCG35660.10096900228978216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)