FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4835767
Sequences flagged as poor quality0
Sequence length8-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGAGGACTT318550.6587372799392527No Hit
GAACTAGGCAAAATGGTACCGTAACTTCGGGAGAAGGTACGCTGCCGATG274770.5682035548859157No Hit
AACTAGGCAAAATGGTACCGTAACTTCGGGAGAAGGTACGCTGCCGATGG230210.47605684889284366No Hit
TGGCATAACCTTCTCCGTCCCTCCATCGCATCATAAACAAGTATCGGAAT168350.34813505282615975No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC164090.33932569538606805No Hit
AGAACGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGCGCCCTT127620.2639084968320434No Hit
ACCAGGGTGGTATTTCAAGGATGGCTCCACAGACACTGGCGTGCCTGCTT107380.22205370937019916No Hit
AGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTAGGAGGCAACCGC102540.2120449558467147No Hit
TGGCGATGGTTGTCCAAGTGGAAGGATGTAGTTAGGTTTAGTAGGCAAAT93810.19399197686737182No Hit
CGGCAGACATGACAAGGAGGGGCCCACAACACCGCACATGCAACCCCTGC87050.18001280872300093No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATAACGGTCCTAAGGTAGCGAAA80000.16543394253693364No Hit
CGGCCCCCCTTGAAAAGCCAGGGGATGACTTGTGGATAGGGGTGAAAGGC76330.1578446604230518No Hit
CGGCCCCCCAAACTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCG71570.14800134084210428No Hit
CGGCCCCCCATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTT64900.13420828588308742No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTTGAAAAGCCAGGGGATGACTTG64710.13381538026956222No Hit
AGAACGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGCCCTTTC64150.13265734267180368No Hit
CGGCCCCCCTAAACTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGC59780.12362051356072366No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC54840.11340496760906803No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC54450.11259847713920046No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAAACTGAAGAGTTTGATCATGGC53920.11150247726989326No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAAACTGAAGAGTTTGATCATGG50830.10511259123940422No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50820.1050919119965871No Hit
TGTTGGGGTTCTAACTCAAGCTTAACAGAGCTGAGGACAATGTATGGTGG49080.10149372374640879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)