FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4844757
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC119300.24624558053169643No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC111220.2295677574747299No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG93190.1923522686483553No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT65780.13577564364941316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)