FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4095658
Sequences flagged as poor quality0
Sequence length8-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC406880.9934423235533827No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC137000.3345005857422666No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC109700.2678446296053039No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT93570.22846145845185317No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG82500.20143283447983207No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61230.149499787335759No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA50670.12371638452234049No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG41750.10193722229736957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)