FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3911606
Sequences flagged as poor quality0
Sequence length8-150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC151140.3863886086686645No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC137220.3508022024713123No Hit
ACACCTCTCTCATACTCAAGACACCCAGTATCAAAGGCAATTCCGAGGTT116700.29834293126659484No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG114800.2934855913402321No Hit
GGAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAG97910.2503063958895656No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG77320.1976681700559821No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC76510.19559740935053277No Hit
CGGCCCCCCTCAACCTGAGAGTTTGATCCTGGCTCAGAGCGAACGCTGGC46350.11849352925626967No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCGCTAAACCTAGCCCCAAACCCAC45210.11557912530045203No Hit
CCCACCTCGTGGCCTCAAGATGGCAGTCACCTTCATTGGCAATAGCACAG44480.11371288417084953No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTCAACCTGAGAGTTTGATCCTGG43530.11128421420766815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)