FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4198578
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNN761481.8136616730712158No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC321020.7645922024075771No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC123390.29388521542293605No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC118290.2817382456631745No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG111100.26461340006068723No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT97820.23298364350977877No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA59930.14273880347107998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)