FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3690970
Sequences flagged as poor quality0
Sequence length8-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCCCAACGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTAT140010.3793311785248864No Hit
CGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTG106900.2896257623334787No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC102930.27886978219817554No Hit
AGGCTTTAGTGGCGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTACG50200.1360076077562267No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA42350.11473948582621912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)