FastQCFastQC Report
Wed 8 May 2024
EGAF00007335401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5667965
Total Bases845.6 Mbp
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC178690.3152630617867259No Hit
NNNNNNNN93440.16485634614892647No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG63560.11213901285558397No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC62010.10940434529853307No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC61460.10843397939119244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)