FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5054464
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC400080.7915379355753647No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT233170.46131498809764987No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC196040.38785517119124796No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG93760.1854993922204214No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC81870.16197563183752026No Hit
NNNNNNNN69760.13801661264181525No Hit
GGGCATGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCA57460.11368168810777957No Hit
CGGCACGTCCCACAGTTGTGTCCTGAGAAATTGCCGTTGCAGTGACATGT52920.10469952897082659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)