FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4233519
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT734091.7339948161328673No Hit
TGGCGCACGGGTGCGTAACGCGTGGGAATCTGCCCTCAGGTTCGGAATAA153220.3619211346400004No Hit
AGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAGCGGGCATAG99680.23545424031402717No Hit
CTCCGCAGCTTGCCTACTACATGATCGGTTCACACACTCACCCACCCCAG90310.21332135275641848No Hit
CGGCAAGCCGCTCGGTGAAATCGCGCTCAATGCGGACAAGACCTACAAGA78040.1843383719312468No Hit
AGGTACCACCGCCGCTCAAGTGGCGTCCGGCTACAGCATCAGTAAAACCA74380.17569308180735696No Hit
GGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTAT74020.17484272540172846No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62330.14722976323006937No Hit
TTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGT60760.14352126446107835No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG57930.13683651827238758No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAAGGCCTGCAGCCGGACGATCGC57070.13480511130338615No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAAGGCCCCTAAGTGGTGACTCAG51600.1218844181400863No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC49650.11727832094293186No Hit
CCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTG48880.11545950307533756No Hit
TGGCATAACCTTCTCCGTCCCTCCATCGCATCATAAACAAGTATCGGAAT43560.10289312508104959No Hit
CGGCACCTATTTTAGGGCCCCCTCTAGATCCACAGGCAAGGCCTGCCTGT42660.10076723406697832No Hit
TCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTG42390.10012946676275694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)