FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1936114
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNN275361.4222303025544982No Hit
GGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTAT86880.4487339071976133No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT35920.18552626549882908No Hit
TTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGT33480.1729237018068151No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC33450.17276875225322477No Hit
AGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACG24090.1244244915330399No Hit
TCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTG22320.11528246787121006No Hit
CGGCCCCCCGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGG20740.10712179138211904No Hit
AGGCGGCGGCGAAGATATTTTCGCTCATTATTCCACCATTCAGATGGATG20040.10350630179834451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)