FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3016114
Sequences flagged as poor quality0
Sequence length8-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNN335741.1131542110145705No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC218340.7239116293349654No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT110160.36523818396784735No Hit
GCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGGC91410.3030720987336686No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG75940.25178093400978874No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC73000.24203329184506953No Hit
GGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGG67600.224129459297626No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATCTACGGAGAGTTTGATCCTGG50260.16663826367305745No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAGGCGACGATCCCTAGCTGGTC47090.15612805086279896No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC46390.15380718368072294No Hit
CGGCCCCCCATCTACGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGC43060.1427664869431328No Hit
TGGCGGAAGACCTTGCTGATCGTCTCCCATGACCAGGGCTTCTTGGATGA38980.12923914679617549No Hit
ATCATGCTAAGGCGAGGATGAAACCGATATCGCCGATACGGTTGTATAGG38270.12688512436864122No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGCGGGCGTGCAGCAGAACAAC35160.11657384303113212No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT33280.11034065688498512No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG31060.10298019239325835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)