FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3016114
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC164620.5458016507333608No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT110920.36775798262267273No Hit
GCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGGC81560.27041418195731326No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG68870.22834017547082106No Hit
GGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGG64090.21249196814178772No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC58570.1941902726488455No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46410.1538734941716394No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC43190.14319750513408974No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAGGCGACGATCCCTAGCTGGTC40490.134245588860368No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATCTACGGAGAGTTTGATCCTGG39870.13218996364195784No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA36270.12025407527699551No Hit
CGGCCCCCCATCTACGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGC34250.1135567156944333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)