FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2042426
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC158100.7740794525725779No Hit
NNNNNNNN140910.6899148365718023No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG90950.44530377110357977No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC79880.3911035210088395No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC67250.3292652952909922No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT62720.30708578915466217No Hit
CGGCACGTCCCACAGTTGTGTCCTGAGAAATTGCCGTTGCAGTGACATGT39960.19564968326881857No Hit
TGGCTGGAGAGGAGCTGCCTGTGACCAGAGGGTTCTCATAGTCAGGAGAA32020.15677434580249175No Hit
TGGCAATACCTTTTGGCTTCCAGGGAAGTTCAAGGCAATAGAGAAGGAGG30460.14913637017938472No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA23830.11667497378117983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)