FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1082994
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC153331.4157973174366618No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC142541.3161661098768782No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG102770.9489433921148224No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT40970.3783031115592515No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC39770.36722271776205595No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT29190.2695305791167818No Hit
CAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGGT29060.26833020312208566No Hit
CGGCCCCCCTATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT28950.2673145003573427No Hit
CGGCACGTCCCACAGTTGTGTCCTGAGAAATTGCCGTTGCAGTGACATGT23160.21385160028587416No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTATGGCACATGCAGCGCAAGTAG21560.19907774188961344No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA13880.12816322158756188No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13470.12437742037352008No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG12920.11929890654980545No Hit
TGGCAATACCTTTTGGCTTCCAGGGAAGTTCAAGGCAATAGAGAAGGAGG12910.11920656993482882No Hit
CGGCCCCCCGATACACGCGGCCAGCCAGCAGACAGAGGACTCTCATTAAG12690.11717516440534297No Hit
AGAACGAACGCTGGCGGCATGCCTAACACATGCAAGTCGAACGATGCTTT12670.1169904911753897No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT12600.11634413487055331No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG11820.1091418789023762No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAGGGACCTGTATGAATGGCTCC11510.10627944383810067No Hit
CGGCCCCCCGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGAC11330.10461738476852134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)