FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4496333
Sequences flagged as poor quality0
Sequence length8-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC246400.5480021163912904No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT162960.3624286724315125No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC139270.30974129362749603No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC101960.2267625640716557No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG83440.1855734439597779No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53870.11980874192369648No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAGGGACCTGTATGAATGGCTCC47960.10666469765473331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)