FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3745184
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGAATTCATGCCCCCCCGGCCCCCCTACCTGGTTGATCCTGCCAGTAG77890.20797376043473434No Hit
AGGCGAGGCCGAAAGGCGTAGTCGATGGGAACAGGGTGAATATTCCCTGG72890.1946232815263549No Hit
TGGCGATGGTTGTCCAAGTGGAAGGATGTAGTTAGGTTTAGTAGGCAAAT71180.19005741773968915No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAA60190.16071306509907124No Hit
TGGCCTCACTCAACTGTGCCTCCTGGGGCCAGATATGTGCTCCCACAGGG52520.14023343045361725No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49050.13096819809120192No Hit
AGGCCCCAACGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTAT39820.10632321402633356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)