FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3636888
Sequences flagged as poor quality0
Sequence length8-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACCACCTCTCTGGAGCAAATAATGGAAATTGGAAATTGATTGTCATTT86200.2370158223184217No Hit
NNNNNNNN68670.1888152728376568No Hit
AGGCTGGGAAATGTAGCCTCTGGCAGAAACTAAAAGTAGACATTTCGAAG39740.1092692433751053No Hit
GTTTCACGCACAGATAAGGTCCTCCCTAGGTCTACAGGAACCCTCTAGGG39670.10907677112960311No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCGTCTAGAGGGCCTCCTGCGGATC37340.10267019495788707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)