FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3460491
Sequences flagged as poor quality0
Sequence length8-150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAGCGGGCATAG187970.5431888133793731No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC127010.3670288407049751No Hit
GGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG99070.2862888532292094No Hit
NNNNNNNN67730.1957236704271157No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC49380.1426965132982574No Hit
TCACCTCTCCCGAACTCAAGATCTTCAGTATCAAAGGCAGTTCTGGAGTT38680.11177604565363701No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)