FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1062474
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCCACTAAAGTCTCAAGGACCCCAACGGCTAGTAGACATCGTTTACG67680.6370038231523784No Hit
ACCAGGGTGGTATTTCAAGGATGGCTCCACAGACACTGGCGTGCCTGCTT67130.6318272258897629No Hit
GAACTAGGCAAAATGGTACCGTAACTTCGGGAGAAGGTACGCTGCCGATG66170.6227917106677434No Hit
TGGCATAACCTTCTCCGTCCCTCCATCGCATCATAAACAAGTATCGGAAT49790.46862323219203483No Hit
AACTAGGCAAAATGGTACCGTAACTTCGGGAGAAGGTACGCTGCCGATGG47970.45149340125028947No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAAACTGAAGAGTTTGATCATGGC45400.42730457404134126No Hit
TGTTGGGGTTCTAACTCAAGCTTAACAGAGCTGAGGACAATGTATGGTGG29460.27727737337572494No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATAACGGTCCTAAGGTAGCGAAA28280.2661712192486593No Hit
TACCAGGGTGGTATTTCAAGGATGGCTCCACAGACACTGGCGTGCCTGCT26720.2514885070128775No Hit
TGGCGATGGTTGTCCAAGTGGAAGGATGTAGTTAGGTTTAGTAGGCAAAT25420.23925291348305933No Hit
CGGCCCCCCAAACTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCG24950.23482927582227894No Hit
GCGCCACTAAAGTCTCAAGGACCCCAACGGCTAGTAGACATCGTTTACGG19820.18654574135461197No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC19580.1842868625491071No Hit
GTTGGGGTTCTAACTCAAGCTTAACAGAGCTGAGGACAATGTATGGTGGG17500.16470991290139805No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC13300.12517953380506253No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13250.12470893405391568No Hit
TGCGTCTTGTTGCAGATTTACCATCAAGTGTAAGTTAAGAGGTTTTTATG13210.1243324542529982No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATTAAGTGGTAGGGGAGCATTGT12550.11812053753785974No Hit
TAACGCGATAAGTAGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTC12090.11379101982730871No Hit
CGGCGGTGGCAGTTCTGCTGTGGACACGCCTGCGCCCGGTCTATATTCCA11910.11209686072318004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)