FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5460487
Sequences flagged as poor quality0
Sequence length8-150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNN250840.4593729460394284No Hit
TGGCCTACAGCAGCCGCTTCCTTTTCCTGGCAGCAGTGTCAGCCAGGGTC116240.2128747857105053No Hit
CTCAAACTCCTGGGCTCAAGCGATCCTCCCACCTTCAGCCTCCCAAAGTA83430.1527885699572218No Hit
TAACACAGAAGCATCTCAAGCCAACGCCCACATTGTGGTCTCACAAGGGT71370.13070262780590816No Hit
CAACACCTGTCAGTCTCAAGCTCAGTGGAACATTTCCATTCTGGAGCAGT61880.1133232255657783No Hit
CCTGAACTCCTGACCTCAAGTGATCTGCCTGCCTCTGTCTCTCAAAGTGC56680.10380026543420028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)