FastQCFastQC Report
Wed 8 May 2024
EGAF00007335492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5460487
Total Bases815.3 Mbp
Sequences flagged as poor quality0
Sequence length8-150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCTACAGCAGCCGCTTCCTTTTCCTGGCAGCAGTGTCAGCCAGGGTC84200.15419870059209004No Hit
CTCAAACTCCTGGGCTCAAGCGATCCTCCCACCTTCAGCCTCCCAAAGTA74240.13595856926314448No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70580.129255870401303No Hit
TAACACAGAAGCATCTCAAGCCAACGCCCACATTGTGGTCTCACAAGGGT66920.12255317153946159No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)