FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4404462
Sequences flagged as poor quality0
Sequence length8-150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGGTCCGCCTCACCGCGTGCACTGGTTCGGCCGGGCCTTTCCCTCT1238662.812284451540279No Hit
GGATTTTCAAGGGACGTCAGGGGCGCACCAGACCCAACAGAGGTGTTGGG984682.235641946734925No Hit
GAAAATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGGGTAG411350.9339392643187749No Hit
TTGGGTGTTAAACCCTCAAGCGTAATGAAAGTGAACGGAGGTGAGAGCCC204300.4638477979830454No Hit
GGCTAGTACATTCGGCAGGTGAGTTGTTACACAGTCCTTAGCGGATTCCG183580.41680459497663963No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT165970.37682241327090576No Hit
TGGGTGTTAAACCCTCAAGCGTAATGAAAGTGAACGGAGGTGAGAGCCCT115440.2620978453214036No Hit
AGGCCCAAGGTTCAACTACGAGCTTTTTAACTGCAACAACTTTAATATAC107650.24441123569689102No Hit
CGGCCCCCCGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGC85560.19425755063842076No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC68180.15479756664945685No Hit
AGGCCTATGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGTGG64280.14594290971292295No Hit
AAAATGGATGGCGCTCAAGCGTCTCACCCATACCTCGCCCTCAGGGTAGA63190.1434681466204045No Hit
AGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCTTA59350.13474971517520187No Hit
CGGCCCCCCAAACGATGCCCTGAGGAGTAGGCGGCCGTGGAGGTCGTGAC57020.12945962526183674No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC49900.11329420029052356No Hit
TGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTC49170.11163679014599287No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC47810.1085490123424836No Hit
GGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTAT44550.10114742731348347No Hit
CGGCCCCCCTCATGCCCTTCACTGGGTGTGTTGGGGAACCAGGACTTTTA44120.10017114462560922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)