FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3605282
Sequences flagged as poor quality0
Sequence length8-150
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT1587234.402512757670552No Hit
CTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACT311600.8642874537969568No Hit
AATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAA257920.7153948012943232No Hit
CGGCCCCCCGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGG230070.6381470298301215No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC220870.612628915019685No Hit
TAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTC205500.5699970210374666No Hit
GGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTAT172190.4776048031748973No Hit
CCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTG144860.4017993599391116No Hit
CGGCCCCCCACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC103960.28835469735793207No Hit
CGGCCCCCCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCA101430.28133721578506204No Hit
ATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTC99430.2757897995219237No Hit
CGGCCCCCCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGC95390.26458401867038417No Hit
CGGCCCCCCAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCG90360.2506322667685912No Hit
TATCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAA88940.24669360122176295No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG83800.23243674142549736No Hit
AGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGG82300.2282761792281436No Hit
AGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAGCGGGCATAG81980.22738859262604144No Hit
CGGCCCCCCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCC79920.22167475387500896No Hit
CGGCCCCCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCA79440.22034337397185574No Hit
NNNNNNNN67010.18586618189645082No Hit
CGGCCCCCCGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTG66420.184229694098825No Hit
ATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAAT63380.17579762137885468No Hit
CGGCCCCCCATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTT62250.1726633311901815No Hit
CGGCCCCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATG60440.1676429194720413No Hit
CGGCCCCCCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCC60170.16689401827651762No Hit
CGGCCCCCCATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTG59710.1656181125359958No Hit
CGGCCCCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGA59080.1638706764131072No Hit
CGGCCCCCCAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGAC55780.15471743957892892No Hit
CGGCCCCCCGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTAC55150.15297000345604034No Hit
CGGCCCCCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGC52790.14642405226553706No Hit
CGGCCCCCCAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACT52560.14578609939527615No Hit
ATCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAAC51630.1432065508329168No Hit
CGGCCCCCCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCAT49390.13699344461820187No Hit
TGGCGCACGGGTGCGTAACGCGTGGGAATCTGCCCTCAGGTTCGGAATAA46300.1284226864916531No Hit
GGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGA46100.12786794486533926No Hit
CATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGT42060.11666216401379975No Hit
CGGCCCCCCTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAG41360.11472056832170133No Hit
CGGCCCCCCACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTG41230.11435998626459733No Hit
GCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACAAACCGC41170.11419356377670319No Hit
CGGCCCCCCATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCT40390.11203007143407921No Hit
CGGCCCCCCGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAA38050.10553959440620733No Hit
CGGCCCCCCACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG37940.10523448651173473No Hit
CGGCCCCCCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAAT37480.1039585807712129No Hit
ATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTG37320.10351478747016184No Hit
CGGCCCCCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAA36760.1019615109164831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)