FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3595341
Sequences flagged as poor quality0
Sequence length8-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCGCACGGGTGCGTAACGCGTGGGAATCTGCCCTCAGGTTCGGAATAA248430.6909775734763406No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC137660.38288440512318583No Hit
CTTGCATAATGGGTCTGTGACTTAATGTATCAAGCAAGCTTAAGCCGTTA119090.3312342278521008No Hit
AGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGCAACCGC95360.2652321434879195No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT76450.21263629792000258No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC71530.19895192138937584No Hit
CGGCCCCCCATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTT62820.17472612472641677No Hit
TTACCCCTACAGCACTCAAGTTATGCCCGTATCGCCTGCACGCCCGAAGT58350.16229336800042055No Hit
TCAGGACACTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTG54020.1502500041025316No Hit
GTACGCTGTCAGGCCTCAAGGACCCTCCAACTGCTTGTAGGCAATCCGTT51140.14223963735289644No Hit
CGGCCCCCCTATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT44320.12327064386938541No Hit
TTCAGGACACTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGT43070.11979392218985625No Hit
GTAATCCTGTCTGAACATAGGGGGACCACCCTCTAAGCCTAAATACTCGT42830.11912639162738665No Hit
GTGTCCCGCCCTACTCAAGTCCGACAATTTCACTTTCGCATACGGGGCTG40490.11261796864330811No Hit
CGGCCCCCCAAAACTGCGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCAA39260.10919687451065142No Hit
TGGCTGATCATGCTCTCACATCAGCTACTGATCGCAGGCTTGGTGGGCCA38210.10627642829984695No Hit
GCGCAGGACCACTCGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGC37600.10457978812023672No Hit
GGCGCAGGACCACTCGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG36230.10076930115947279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)