FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5356358
Sequences flagged as poor quality0
Sequence length8-150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC789231.473445202878523No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC553621.0335754256903664No Hit
CGGCCCCCCTATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT176010.3286001421114869No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT162740.3038258458452553No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC151160.28220667849311043No Hit
TCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTA127600.23822156771448064No Hit
ATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTG126590.23633595812677194No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG121400.22664653856220965No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT115640.21589296309171271No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT104740.1955433150659459No Hit
CGGCCATGCTTTACGGGCTTGTAGGTGATGGAGAACTCGCCCAGGTAGTG100700.18800087671511126No Hit
AGGCATCACCTGTGCCATACCAGTTAAACAGGCTGATTCTGGAAGTTCTG96320.17982367870108756No Hit
CCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAAC83260.15544143987388445No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG66480.12411418355531875No Hit
TTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGT55740.10406324595928801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)