FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2985970
Sequences flagged as poor quality0
Sequence length8-150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC306461.0263331513712461No Hit
NNNNNNNN106250.3558307685609702No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG72390.24243378198709298No Hit
TCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTA66180.22163652012578827No Hit
CCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAAC65480.2192922232976219No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC60160.2014755674035573No Hit
CGGCCCCCCGCCGAAGGCGGTGCAGACCGCCATCCTGGGCGGCGCCATGA58900.19725583311285777No Hit
TGGCCTGACCCAGTCGGAGCCTGACATGGTGGAGGGAAAGGGAGACAAGT56210.18824703530176123No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT52350.175319912792158No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT50330.16855494194516354No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC48720.16316305924038085No Hit
TTAAGAAGAGGGTAATGTTTGAGCAAATATCTGATGCTGGGAGGCAGCAG46000.15405379156522No Hit
CGGCCCCCCTATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT45150.15120714541673225No Hit
CGGCCCCCCGATACACGCGGCCAGCCAGCAGACAGAGGACTCTCATTAAG41150.13781116354149572No Hit
CGGCCCCCCAGGATGGTAAAAGTAACCAATCTTCAACAACCACAGGTACT36640.12270719397716656No Hit
TGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGGCCCTGGCCCTGACC35560.11909027887085269No Hit
TGGCGGCGGCGCCATTAAAGCGAGGAGGAGGCGAGAGCGGCCGCCGCTGG35310.11825303000365041No Hit
TGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATA33980.11379886603013425No Hit
AGGCAAGCACCGGAAGCACCCCGGCGGCCGCGGTAATGCTGGTGGTCTGC32230.10793812395971827No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG31460.10535939744873526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)