FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4679006
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC162560.34742421787875455No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC117090.2502454581165316No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC87830.18771080866320755No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT67350.1439408284580101No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG62490.13355400698353453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)