FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5593214
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC385880.6899074485617751No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC208840.3733810292257725No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG169160.3024379185205501No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC165240.29542942572910674No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT128610.22993935150702263No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG95670.1710465574891288No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG74420.13305409018857492No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA70450.1259562033564244No Hit
ATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTT65950.11791073969277771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)