FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5017171
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC359350.7162402876043094No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG152700.30435478479804656No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC140440.27991870318950657No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC111510.22225672595173654No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT108910.21707452267423216No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG107910.2150813675674997No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA97130.19359515551692377No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG79720.15889432510871165No Hit
ATCATAATCCTCTCTCAAGGACTTCAAACTCTGCTCCCACTAATAGCTTT63900.12736261132020416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)