FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6438455
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNN310010.4814975021181324No Hit
CGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTG262480.40767544387589877No Hit
GGGCCCCAACGGCTAGTAGACATCGTTTACGGCATGGACTACCAGGGTAT214760.33355828378081387No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC209500.3253886219597714No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG143230.22246020202051578No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC142260.22095362940332736No Hit
GCGCCACTAAAGCCTCAAGGGCCCCAACGGCTAGTAGACATCGTTTACGG116040.18022957370984188No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT113900.17690579494614778No Hit
AAACCAGGCCGCTGCAACTGTTTATTAAAAACATAGCACTCTGCAAACAC109020.16932633683080803No Hit
CTAACGCGATAAGTAGACCGCCTGGGGAGTACGGTCGCAAGACTAAAACT105970.16458917550872065No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG99220.154105293894265No Hit
TAACGCGATAAGTAGACCGCCTGGGGAGTACGGTCGCAAGACTAAAACTC98100.15236574613008866No Hit
ATCATAATCCTCTCTCAAGGACTTCAAACTCTGCTCCCACTAATAGCTTT95420.14820325683723812No Hit
TCAGCAGAGTTCTCTCAAGCGCCTTGGTCTACTCGACCTGACCACCTGTG91560.14220802972141608No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTTAACTGAAGAGTTTGATCATGG89160.13848042736960964No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTTGAAAAGCCGGGGGATGACTTG88710.13778150192864594No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA82740.12850909107852737No Hit
TGCGCCACTAAAGCCTCAAGGGCCCCAACGGCTAGTAGACATCGTTTACG81590.12672294828495345No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC77520.12040155596334835No Hit
CGGCCCCCCTTGAAAAGCCGGGGGATGACTTGTGGATAGGGGTGAAAGGC64710.10050547841058141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)