FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3328049
Sequences flagged as poor quality0
Sequence length8-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC199080.5981883079245528No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC183350.5509233788324631No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG116690.3506258471554956No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC94850.285001813374743No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT69050.20747891632605167No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG62710.18842871604354383No Hit
TCACCTCTCCCGTACTCAAGACAGCCAGTATTGAAGGCATTTCCGAGGTT52800.15865151023918217No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA49810.14966726751919818No Hit
CGGCCCCCCTATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT44770.13452325972363988No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG38450.11553315471016203No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTATGGCACATGCAGCGCAAGTAG35950.10802124608141286No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT35170.10567753058924312No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT35150.10561743532021314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)