FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3869661
Sequences flagged as poor quality0
Sequence length8-150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATCTGCCCAGGTCTGGGACCCCGCACCGTGGGGTTCGCATGGCCTT355780.9194087027261562No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC344870.8912150185765626No Hit
CCTTTGAGGGCGACCTCAAGTGGCACCACCACAACATCACCTATTGGATC308390.7969431947656397No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC296970.7674315657107948No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG204320.528004907923459No Hit
CGGCTCCCAGGCCCAGCTTGTCCAGACGCCTCGGGCCCAGCACCGACGCG146070.3774749260981776No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAGACACCTCTGCCCTCACCATGA141670.3661044210332636No Hit
CTTTGAGGGCGACCTCAAGTGGCACCACCACAACATCACCTATTGGATCC110890.28656256969279736No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC102490.264855241841598No Hit
TTGGAATCTGCCCAGGTCTGGGACCCCGCACCGTGGGGTTCGCATGGCCT92970.24025360361023873No Hit
TGGCCCAGGTGACCGGGGCCCTCCGGAGTGGCAGGGGGAAGATGCTGCTG92390.23875476430622733No Hit
CGGCCCCCCAGACACCTCTGCCCTCACCATGAGCCTCTGGCAGCCCCTGG87110.22511015822833058No Hit
CGGCCCCCCTAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCT74320.192058167369183No Hit
CGGCCCCCCTATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT71160.1838920773680175No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG69770.18030003144978332No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG69730.1801966632219205No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT69490.17957645385474336No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTAGGGACCTGTATGAATGGCTCC66640.17221146761951497No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCGAGACACCTCTGCCCTCACCATG66630.17218562556254927No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA65000.167973370277138No Hit
TGGCCAGCTTCCCCAAGATGTGACTCCAGCCAGCCAAATCCATCCTGCTC63660.16451053464373236No Hit
ACAGCTGTCCTGGCTCAAGAAACAGCTGGCGGCGGCCAGGGAGGACTACG62400.16125443546605245No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTATGGCACATGCAGCGCAAGTAG61530.15900617651003537No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT56960.1471963564767043No Hit
TGGCCCTACCAACTTTGCACCCATCATCAACCATGTGGCCAGGTTTGCAG56490.14598177979931576No Hit
CGGCCCCCCGAGACACCTCTGCCCTCACCATGAGCCTCTGGCAGCCCCTG48120.12435197811901351No Hit
NNNNNNNN47580.12295650704286498No Hit
TGGCTCTGGAGAAGTCTCTTGTCCGGCTCCTTCTGCTTGTCCTGATACTG46090.11910604055497369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)