FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3155570
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC130110.41231853516163486No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC95470.30254438976159614No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG50240.15921053882499833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)