FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3205038
Sequences flagged as poor quality0
Sequence length8-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACCGACAACGCTCAAGGCCACAGGGTCCACCCACACAGCGCCAACA127690.3984040126825329No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC101550.316844917283352No Hit
GGGCATTGGGAGGAAGAGCCAAGGACAGGTCTCCCGCTGGGGCTCAGGCG99540.31057354078173177No Hit
CGGCCCCCCGGTGATGGTGGTAGAAGTTGGGGTGACTTCAGGAAGGTGTG72760.22701758918303No Hit
CGGCCCCCCAAACATAGCATTGCGATGGCCAGAAAGTGGTGTTGACGCAA69140.21572287130448997No Hit
CGGCCCCCCAACCCCTTGCAGGGGGCCATGTACGCCTTCCCTCGGATCTT53090.16564546192588045No Hit
ACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACC52380.16343019957953697No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG51660.16118373635507596No Hit
AGGCAGGGGCCTTGCATAGTTGGGTGCCTGGTTTGTCACTGAGCCACGGC50360.1571276221997992No Hit
CTTATTCTACACCCCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC50350.15709642132168167No Hit
TACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGAT48880.15250989223840716No Hit
AGAACGCCATTCTCTCAAGATCTAACTCATTCCCCGCTCCGCTCAACCTC47100.14695613593348972No Hit
CGGCCCCCCAACACGGGAAAACTTACCAGGTCCAGACATAGTGAGGATTG46450.14492807885585132No Hit
CGGCCCCCCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAA46290.1444288648059711No Hit
TGGCTGGAGCAGAGGGCGCTGTGCATGTAAGCCGTAGGCATGGGCAGGTG45830.14299362441256547No Hit
CGGCCCCCCAAGCATTGTGATGGTCCCAAAGGATGTTGACACAATGTGAT42650.1330717451711961No Hit
TAGAACGCCATTCTCTCAAGATCTAACTCATTCCCCGCTCCGCTCAACCT41070.12814200642862894No Hit
CGGCCCCCCTTGGCGGAGCACCTGTTTCTAAGTGCAGCTTCTCTACCATG40760.127174779206986No Hit
TGGCGGGTCCGCCTCACCGCGTGCACTCGTCCGGCCGGGCCTTCCTTCTG38900.12137141587712844No Hit
CGGCCCCCCTGCTGAACTTGGCCATCCACAGGTAGACTTTGGTAGCTTGG37520.11706569469691155No Hit
AGGCCCTACCACAAGCCTTGAACCAACTTAACAGTCTACTTCTAGAGAGG37480.1169408911844415No Hit
CCCCCCTCCTGACCTCAAGTGATCTGCCCGCCTGGACTTCCCAAAGTGCT36330.11335279020092742No Hit
CTGTTTCCTGCGTCAATGGCTAGGTTGGATAAGGCTGTTTAAGGTCTGAG35920.11207355419810935No Hit
AGGCCCAAGGTTCAACTACGAGCTTTTTAACTGCAACAACTTTAATATAC33760.10533416452472638No Hit
CGGCCCCCCGGTGTGCACTGGTCGCGCCCATCTTGCTGCCGGGGACAGGC33230.10368051798449816No Hit
CGGCCCATGGGTCCTCCTCGCCCTCGGCCTCCACGACCATTGCCACCACC32960.10283809427532528No Hit
CGGCCCCCCTGCCCCAAACTTCCAGTGCTCCCAAGCAAGAGACTTCTGGC32770.10224527759109252No Hit
CGGCAGAATCGACAAAAACAAACCCCACAACCCCACACGCACAACCCCTG32630.10180846529744733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)