FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3942620
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC216080.5480619486534335No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC215580.5467937564360755No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC118400.3003079170703745No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG92830.2354525670746864No Hit
CTTATTCTACACCCCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC80720.2047369515702756No Hit
TTATTCTACACCCCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT62210.15778847568368243No Hit
CGGCCCCCCAAGCATTGTGATGGTCCCAAAGGATGTTGACACAATGTGAT58730.14896185785087074No Hit
AGGCTATCTGAACACGGTGACTGTCTCTCCAGATGGATCCCTCTGTGCTT53570.13587411416773618No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAAGCATTGTGATGGTCCCAAAGG50640.12844250777401828No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT47730.12106162906899473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)