FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5336297
Sequences flagged as poor quality0
Sequence length8-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC409370.7671424585250783No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC307860.5769169144820837No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG219100.41058434341266986No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG129510.24269638665164253No Hit
AGGCGCTGCCCATGGGAGCCCTGCCCCAGGGGCCCATGCAGAATGCCACC124560.2334202912618994No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC102820.1926804298936135No Hit
GGTTCCACTTCCGGCTCTGGTGTCACTGGCTCCTCGTTCAGTGTCTGCAG92410.17317252019518403No Hit
GTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACT88480.1658078626433274No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG80010.1499354327542114No Hit
AGAAATAGGGCAATCTCAAGCAGTGCTATTTCGAGAGCTGTGTCTGATGC79680.1493170263948952No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT69650.13052122098901167No Hit
CGGCCCCCCGGCTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATCTTCT67740.12694195993963603No Hit
CTCATGGTTCACACCCATGACGAACATGGGGGCATCAGCAGAGGGGGCAG67200.12593002226075498No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCGGCTCTCTGCTCCTCCTGTTCGA66230.12411228235609825No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT59210.11095709253064437No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAACACGGGAAACCTCACCCGGCC56830.10649707090890931No Hit
AGTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAAC56030.10499790397723366No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCAAGCATTGTGATGGTCCCAAAGG54490.10211200763375801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)