FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5336297
Sequences flagged as poor quality0
Sequence length8-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC413750.7753503974760025No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC300550.5632182766438975No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG160410.30060170938761466No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC125860.23585643752587235No Hit
AGGCGCTGCCCATGGGAGCCCTGCCCCAGGGGCCCATGCAGAATGCCACC116890.21904702830445907No Hit
GACTGTGAGTGCGTTCGTAGTTTGAGTTTGCTAGGCAGAATAGTAATGAG90010.16867501940015708No Hit
GGTTCCACTTCCGGCTCTGGTGTCACTGGCTCCTCGTTCAGTGTCTGCAG80240.15036644324706816No Hit
GTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACT79000.1480427345029709No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG70070.13130828362814137No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT65450.12265059459771449No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT63040.11813435421604158No Hit
CGGCCCCCCGGCTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATCTTCT61120.11453635358002No Hit
AGAAATAGGGCAATCTCAAGCAGTGCTATTTCGAGAGCTGTGTCTGATGC56720.10629093545580391No Hit
CGGCCCCCCGTCTAGAGGCTGTGTGGGGCTGGCAGGATGTTGAAGACCGC54910.10289907027288772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)