FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007354005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007354005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6589623
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTACGCAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA140130.21265252959084308TruSeq Adapter, Index 18 (97% over 40bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG121090.18375861562945256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)