FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007358092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007358092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65435564
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC3838180.5865587098783164TruSeq Adapter, Index 9 (100% over 50bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC2535390.38746361229498993TruSeq Adapter, Index 9 (100% over 50bp)
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA826120.1262493893993181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)