FastQCFastQC Report
Sat 18 Mar 2023
EGAF00007358440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007358440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70917918
Sequences flagged as poor quality0
Sequence length101-151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACAATGATCTCGTAT12952601.8264213565886127TruSeq Adapter, Index 23 (97% over 37bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACAATGATCTCGTATG7521721.0606233533251779TruSeq Adapter, Index 23 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)