FastQCFastQC Report
Thu 16 Mar 2023
EGAF00007358445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007358445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53439878
Sequences flagged as poor quality0
Sequence length125
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGTTATAGTGTAGATCT5326460.9967200898175703Illumina Single End PCR Primer 1 (97% over 36bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGTTATAGTGTAGATCTC1762200.32975374681805975Illumina Single End PCR Primer 1 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)