FastQCFastQC Report
Thu 16 Mar 2023
EGAF00007358446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007358446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65761037
Sequences flagged as poor quality0
Sequence length101-151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCTATCATCTCGTAT5693760.8658257624495794TruSeq Adapter, Index 9 (97% over 37bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCTATCATCTCGTATG2941500.44730134045787634TruSeq Adapter, Index 9 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)