FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007358481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007358481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45909391
Sequences flagged as poor quality0
Sequence length125-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTTCAGGGTGTAGATCT1462460.3185535612964241Illumina Single End PCR Primer 1 (97% over 37bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTTCAGGGTGTAGATCTC1156590.2519288482829145Illumina Single End PCR Primer 1 (97% over 36bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)