FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007358549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007358549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43400666
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTTCAGGGTGTAGATCT19211354.42651041345771Illumina Single End PCR Primer 1 (97% over 37bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTTCAGGGTGTAGATCTC7518791.7324135072028617Illumina Single End PCR Primer 1 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)